Lumpy uncoupling membrane – tile over or start over?

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Replies
Ask Nobleseal if you can pour self leveling compound over their membrane and then thinset to the self leveling?
Or instead of thinset do a full mudset of the floor but that assembly will be thicker and you may have a transition problem or a step at the threshold.
Basically call the manufacturer first and try get their recommendation.
I looks to me like there was too much adhesive applied, and /or insufficient time for the adhesive to set up before applying the membrane. In either case, rolling would have pushed the adhesive sideways into those bubbles. The adhesive should be thin enough and tacky enough that it does not spread when the roller is pressing the membrane down.
I would pull that membrane and start over if possible. Practice on some extra plywood to get the correct adhesive thickness and tack before working the floor.
If you are going to use the existing membrane, a skim coat of thin set over the membrane will level it out for tile setting. Those "squishy" bubbles will have to harden before skim coating. Could take awhile as the adhesive has to dry through the floor.